Data Depository and Summary Page for seeQTL

Processed genotype and expression data:

genotype_expression_data.tar.gz (gzip text matrix format, 300MB)

genotype_expression_data.7z (7zip text matrix format, 250MB)

eQTLs of meta-analysis (consensus eQTLs) from HapMap human lymphoblastoid cell lines (sample summary):

HapMap cis eQTL consensus, HapMap trans eQTL consensus

eQTLs of human brain from Myers et al:

Myers European brain cis eQTL, Myers European brain trans eQTL

Processed RNA-seq data:

Montgomery et al 2010 Mapped RNA-seq data with read count (Montgomery)

Pickrell et al 2010 Mapped RNA-seq data with read count (Yale, Argonne)

Principal Component Analysis:

PCs of genotype data for each dataset

HapMap genotype samples:

Consensus genotype of HapMap3 of Release 3 (HapMap FTP website)

Please cite the following reference if you used the processed genotype data, processed expression data and eQTLs in your study:

Xia, K., Shabalin, A.A., Huang, S., Madar, V., Zhou, Y.H., Wang, W., Zou, F., Sun, W., Sullivan, P.F. and Wright FA. (2011) seeQTL: A searchable database for human eQTLs. Bioinformatics. (2012) 28(3): 451-452

The summarized table of eQTLs in each dataset: