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seeQTL: A searchable human eQTL browser and database

CLICK HERE TO ACCESS BROWSER

Key features:

  • Multiple datasets with lymphoblastoid cell line, brain and monocyte

  • Searchable database by dbSNP ID, Gene Symbol and genomic coordinate

  • Segment plot of cis-eQTL for each gene

    • Bar shows location of gene body.

    • Segment shows SNP location.

    • Connected lines indicate cis-eQTL association

    • The height and color of each segment indicates strength of eQTL.

  • Manhattan plot for both cis-eQTL and trans-eQTL

    • Gene based plots of associated eQTLs in the genomic window

    • Multiple plots if multiple genes in the genomic window

  • Population specific eQTL on different tracks or subtracks

  • Consensus score of each eQTL for HapMap LCL samples

  • Users’ selection of favored datasets or tracks

 
License agreement:

The eQTL browser of seeQTL is under the Perl Artistic License, which allows for unrestricted use including commercial use.

Reference:

Xia, K., Shabalin, A.A., Huang, S., Madar, V., Zhou, Y.H., Wang, W., Zou, F., Sun, W., Sullivan, P.F. and Wright FA. (2011) seeQTL: A searchable database for human eQTLs. Bioinformatics (2012) 28(3): 451-452 (PubMed)